4QYZ Immune System Dna Rna date Jul 26, 2014
title Crystal Structure Of A Crispr Rna-Guided Surveillance Comple Cascade, Bound To A Ssdna Target
authors S.Mulepati, S.Bailey
compound source
Molecule: Crispr System Cascade Subunit Casa
Chain: A
Synonym: Crispr Type I-Eecoli-Associated Protein Casacse1 Associated Protein Casacse1;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Casa, Cse1, Ygcl, B2760, Jw2730
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Crispr System Cascade Subunit Casb
Chain: B, C
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Casb, Cse2, Ygck, B2759, Jw2729
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Crispr System Cascade Subunit Casc
Chain: D, E, F, G, H, I
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Casc, Cas4, Cse4, Ygcj, B2758, Jw2728
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Crispr System Cascade Subunit Casd
Chain: J
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Casd, Cas5, Ygci, B2757, Jw5844
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Crispr System Cascade Subunit Case
Chain: K
Synonym: Case Endornase, Crrna Endonuclease
Ec: 3.1.-.-
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Case, Cas6e, Ygch, B2756, Jw2726
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (55-Mer)
Chain: L
Engineered: Yes
Other_details: Crrna

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (33-Mer)
Chain: M
Engineered: Yes
Other_details: Target Dna

Synthetic: Yes
Organism_scientific: Enterobacteria Phage Lambda
Organism_taxid: 10710
Other_details: This Sequence Is From Lambda Phage
symmetry Space Group: P 31 2 1
R_factor 0.224 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.869 223.869 290.651 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.03 Å
ligand ZN enzyme Hydrolase E.C.3.1 BRENDA
note 4QYZ (Molecule of the Month:pdb181)
Gene
Ontology
ChainFunctionProcessComponent
A


B, C


F, E, H, D, I, G


J


K


Primary referenceCrystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target., Mulepati S, Heroux A, Bailey S, Science. 2014 Aug 14. pii: 1256996. PMID:25123481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1161 Kb) [Save to disk]
  • Biological Unit Coordinates (4qyz.pdb1.gz) 1149 Kb
  • LPC: Ligand-Protein Contacts for 4QYZ
  • CSU: Contacts of Structural Units for 4QYZ
  • Structure Factors (1692 Kb)
  • Retrieve 4QYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYZ from S2C, [Save to disk]
  • Re-refined 4qyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QYZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4QYZ, from MSDmotif at EBI
  • Fold representative 4qyz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyz_M] [4qyz_A] [4qyz_K] [4qyz_I] [4qyz_G] [4qyz_F] [4qyz_H] [4qyz_J] [4qyz_D] [4qyz_E] [4qyz_C] [4qyz] [4qyz_L] [4qyz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QYZ: [CRISPR_assoc ] by SMART
  • Other resources with information on 4QYZ
  • Community annotation for 4QYZ at PDBWiki (http://pdbwiki.org)

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