4R28		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	5CM	enzyme
Gene	MJLS
Gene Ontology	Chain Function Process Component D, C, A, B endonuclease activity
Primary reference	Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix., Horton JR, Wang H, Mabuchi MY, Zhang X, Roberts RJ, Zheng Y, Wilson GG, Cheng X, Nucleic Acids Res. 2014 Oct 29;42(19):12092-101. doi: 10.1093/nar/gku871. Epub, 2014 Sep 27. PMID:25262349

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (608 Kb) [Save to disk] Biological Unit Coordinates (4r28.pdb1.gz) 599 Kb LPC: Ligand-Protein Contacts for 4R28 CSU: Contacts of Structural Units for 4R28 Structure Factors (362 Kb) Retrieve 4R28 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4R28 from S2C, [Save to disk] Re-refined 4r28 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4R28 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4r28] [4r28_A] [4r28_B] [4r28_C] [4r28_D] [4r28_X] [4r28_Y] SWISS-PROT database:

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