4R2G Crystal Structure of PGT124 Fab bound to HIV-1 JRCSF gp120 core and to CD4 date
authors Garces, F., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.2625
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.28
ligand BMA, CL, GOL, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, O, K, E


H, F, L, B


Primary referenceStructural Evolution of Glycan Recognition by a Family of Potent HIV Antibodies., Garces F, Sok D, Kong L, McBride R, Kim HJ, Saye-Francisco KF, Julien JP, Hua Y, Cupo A, Moore JP, Paulson JC, Ward AB, Burton DR, Wilson IA, Cell. 2014 Sep 25;159(1):69-79. doi: 10.1016/j.cell.2014.09.009. PMID:25259921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (601 Kb) [Save to disk]
  • Biological Unit Coordinates (4r2g.pdb1.gz) 155 Kb
  • Biological Unit Coordinates (4r2g.pdb2.gz) 154 Kb
  • Biological Unit Coordinates (4r2g.pdb3.gz) 154 Kb
  • Biological Unit Coordinates (4r2g.pdb4.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4R2G
  • CSU: Contacts of Structural Units for 4R2G
  • Structure Factors (1655 Kb)
  • Retrieve 4R2G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R2G from S2C, [Save to disk]
  • Re-refined 4r2g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R2G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R2G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R2G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r2g_I] [4r2g_A] [4r2g_E] [4r2g_D] [4r2g_Q] [4r2g_N] [4r2g_C] [4r2g_L] [4r2g_J] [4r2g_O] [4r2g_M] [4r2g] [4r2g_F] [4r2g_P] [4r2g_B] [4r2g_K] [4r2g_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4R2G: [IG_like] [IGv ] by SMART
  • Other resources with information on 4R2G
  • Community annotation for 4R2G at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science