4R79 Recombination Dna date Aug 27, 2014
title Mos1 Transposase Paired-End Complex With Left Transposon End
authors J.M.Richardson
compound source
Molecule: Left Inverted Repeat Nts
Chain: C, E, G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthesised By Idt

Molecule: Left Inverted Repeat Ts
Chain: D, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthesised By Idt

Molecule: Left Inverted Repeat Nts H
Chain: H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthesised By Idt

Molecule: Mariner Mos1 Transposase
Chain: A, B
Synonym: Transposable Element Mos1 Transposase
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Drosophila Mauritiana
Organism_common: Fruit Fly
Organism_taxid: 7226
Gene: Mariner\T, T
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.783 86.885 132.379 90.00 99.03 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand MN, SO4 enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceStructural Basis for the Inverted Repeat Preferences of mariner Transposases., Trubitsyna M, Grey H, Houston DR, Finnegan DJ, Richardson JM, J Biol Chem. 2015 May 22;290(21):13531-40. doi: 10.1074/jbc.M115.636704. Epub, 2015 Apr 13. PMID:25869132
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (4r79.pdb1.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 4R79
  • CSU: Contacts of Structural Units for 4R79
  • Structure Factors (2849 Kb)
  • Retrieve 4R79 in mmCIF format [Save to disk]
  • Re-refined 4r79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R79
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4R79, from MSDmotif at EBI
  • Fold representative 4r79 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r79_E] [4r79_A] [4r79_F] [4r79_D] [4r79] [4r79_G] [4r79_H] [4r79_C] [4r79_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4R79
  • Community annotation for 4R79 at PDBWiki (http://pdbwiki.org)

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