4R9K Structure of thermostable eightfold mutant of limonene epoxide hydrolase from Rhodococcus erythropolis date
authors Floor, R.J., Wijma, H.J., Jekel, P.A., Scheltinga, A.C.Terwisscha.van., Dijkstra, B.W., Janssen, D.B.
compound source
symmetry
R_factor
R_Free 0.16476
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand GOL, HYH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceX-ray crystallographic validation of structure predictions used in computational design for protein stabilization., Floor RJ, Wijma HJ, Jekel PA, Terwisscha van Scheltinga AC, Dijkstra BW, Janssen DB, Proteins. 2015 Mar 4. doi: 10.1002/prot.24791. PMID:25739581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4r9k.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (4r9k.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4R9K
  • CSU: Contacts of Structural Units for 4R9K
  • Structure Factors (1466 Kb)
  • Retrieve 4R9K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R9K from S2C, [Save to disk]
  • Re-refined 4r9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4R9K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4R9K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R9K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r9k_A] [4r9k] [4r9k_C] [4r9k_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4R9K
  • Community annotation for 4R9K at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science