4RA0 An engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis date
authors Kariolis, M.S., Kapur, S., Mathews, I.I., Cochran, J.R.
compound source
symmetry
R_factor
R_Free 0.24255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.07
ligand CA, CL, NAG, NI, SO4 enzyme
Primary referenceAn engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis., Kariolis MS, Miao YR, Jones DS 2nd, Kapur S, Mathews II, Giaccia AJ, Cochran JR, Nat Chem Biol. 2014 Nov;10(11):977-83. doi: 10.1038/nchembio.1636. Epub 2014 Sep , 21. PMID:25242553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk]
  • Biological Unit Coordinates (4ra0.pdb1.gz) 373 Kb
  • LPC: Ligand-Protein Contacts for 4RA0
  • CSU: Contacts of Structural Units for 4RA0
  • Structure Factors (952 Kb)
  • Retrieve 4RA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RA0 from S2C, [Save to disk]
  • Re-refined 4ra0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RA0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RA0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ra0_C] [4ra0_A] [4ra0] [4ra0_B] [4ra0_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4RA0: [IG] [LamG ] by SMART
    • Other resources with information on 4RA0
  • Community annotation for 4RA0 at PDBWiki (http://pdbwiki.org)

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