4RA4 Transferase Transferase Inhibitor date Sep 09, 2014
title Crystal Structure Of Human Protein Kinase C Alpha In Complex Compound 28 ((R)-6-((3s,4s)-1,3-Dimethyl-Piperidin-4-Yl)-7- Phenyl)-4-Methyl-2,10-Dihydro-9-Oxa-1,2,4a-Triaza-Phenanthr
authors M.A.Argiriadi, D.M.George
compound source
Molecule: Protein Kinase C
Chain: A
Fragment: Kinase Domain
Ec: 2.7.11.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkca
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.412 44.468 85.502 90.00 114.72 90.00
method X-Ray Diffractionresolution 2.63 Å
ligand 3KZ, SEP, TPO enzyme Transferase E.C.2.7.11.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimized Protein Kinase C theta (PKCtheta) Inhibitors Reveal Only Modest Anti-Inflammatory Efficacy in a Rodent Model of Arthritis., George DM, Breinlinger EC, Argiriadi MA, Zhang Y, Wang J, Bansal-Pakala P, Duignan DB, Honore P, Lang Q, Mittelstadt S, Rundell L, Schwartz A, Sun J, Edmunds JJ, J Med Chem. 2014 Sep 25. PMID:25254961
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4ra4.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4RA4
  • CSU: Contacts of Structural Units for 4RA4
  • Structure Factors (297 Kb)
  • Retrieve 4RA4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RA4 from S2C, [Save to disk]
  • Re-refined 4ra4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RA4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RA4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RA4, from MSDmotif at EBI
  • Fold representative 4ra4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ra4] [4ra4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4RA4: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 4RA4
  • Community annotation for 4RA4 at PDBWiki (http://pdbwiki.org)

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