4RAZ Crystal structure of Magnetospirillum gryphiswaldense MSR-1 holo-Fur date
authors Deng, Z., Wang, Q., Chen, Z.
compound source
R_Free 0.22729
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand EDO, MN enzyme
A, B

Primary referenceMechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator., Deng Z, Wang Q, Liu Z, Zhang M, Machado AC, Chiu TP, Feng C, Zhang Q, Yu L, Qi L, Zheng J, Wang X, Huo X, Qi X, Li X, Wu W, Rohs R, Li Y, Chen Z, Nat Commun. 2015 Jul 2;6:7642. doi: 10.1038/ncomms8642. PMID:26134419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4raz.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4raz.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4RAZ
  • CSU: Contacts of Structural Units for 4RAZ
  • Structure Factors (279 Kb)
  • Retrieve 4RAZ in mmCIF format [Save to disk]
  • Re-refined 4raz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RAZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4raz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4raz] [4raz_A] [4raz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RAZ
  • Community annotation for 4RAZ at PDBWiki (http://pdbwiki.org)

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