4RB3 Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator date
authors Deng, Z., Chen, Z.
compound source
symmetry
R_factor
R_Free 0.26485
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand MN, SO4 enzyme
Gene MGMSRV2
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceMechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator., Deng Z, Wang Q, Liu Z, Zhang M, Machado AC, Chiu TP, Feng C, Zhang Q, Yu L, Qi L, Zheng J, Wang X, Huo X, Qi X, Li X, Wu W, Rohs R, Li Y, Chen Z, Nat Commun. 2015 Jul 2;6:7642. doi: 10.1038/ncomms8642. PMID:26134419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (4rb3.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 4RB3
  • CSU: Contacts of Structural Units for 4RB3
  • Structure Factors (120 Kb)
  • Retrieve 4RB3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RB3 from S2C, [Save to disk]
  • Re-refined 4rb3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RB3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RB3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h4rb3, region B:20-103 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rb3_C] [4rb3_A] [4rb3_D] [4rb3_B] [4rb3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RB3
  • Community annotation for 4RB3 at PDBWiki (http://pdbwiki.org)

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