4RCJ Crystal structure of YTHDF1 YTH domain in complex with 5mer m6A RNA date
authors Tempel, W., Xu, C., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2096
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand 6MZ, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the discriminative recognition of N6-methyladenosine RNA by the human YT521-B homology domain family of proteins., Xu C, Liu K, Ahmed H, Loppnau P, Schapira M, Min J, J Biol Chem. 2015 Aug 28. pii: jbc.M115.680389. PMID:26318451
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4rcj.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4RCJ
  • CSU: Contacts of Structural Units for 4RCJ
  • Structure Factors (1070 Kb)
  • Retrieve 4RCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RCJ from S2C, [Save to disk]
  • Re-refined 4rcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RCJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RCJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rcj] [4rcj_B] [4rcj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RCJ
  • Community annotation for 4RCJ at PDBWiki (http://pdbwiki.org)

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