4RD9 X-RAY STRUCTURE OF THE APO FORM OF THE AMYLOID PRECURSOR PROTEIN-LIKE PROTEIN 1 (APLP1) E2 DOMAIN date
authors Dahms, S.O., Than, M.E.
compound source
symmetry
R_factor
R_Free 0.2473
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInteraction of the amyloid precursor protein-like protein 1 (APLP1) E2 domain with heparan sulfate involves two distinct binding modes., Dahms SO, Mayer MC, Roeser D, Multhaup G, Than ME, Acta Crystallogr D Biol Crystallogr. 2015 Mar 1;71(Pt 3):494-504. doi:, 10.1107/S1399004714027114. Epub 2015 Feb 26. PMID:25760599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (4rd9.pdb1.gz) 126 Kb
  • CSU: Contacts of Structural Units for 4RD9
  • Structure Factors (884 Kb)
  • Retrieve 4RD9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RD9 from S2C, [Save to disk]
  • Re-refined 4rd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RD9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RD9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RD9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rd9_B] [4rd9] [4rd9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RD9
  • Community annotation for 4RD9 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science