4RE1 Transcription Protein Binding date Sep 21, 2014
title Crystal Structure Of Human Tead1 And Disulfide-Engineered Ya
authors Z.Xu, Z.Zhou
compound source
Molecule: Transcriptional Enhancer Factor Tef-1
Chain: A, B
Fragment: Yap Binding Domain (Unp Residues 209-426)
Synonym: Ntef-1, Protein Gt-Iic, Tea Domain Family Member 1 Transcription Factor 13, Tcf-13;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead1, Tcf13, Tef1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Yorkie Homolog
Chain: C, D
Fragment: Tead Binding Domain (Unp Residues 50-171)
Synonym: 65 Kda Yes-Associated Protein, Yap65
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Yap1, Yap65
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.250 105.030 164.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL enzyme
Primary referenceTargeting Hippo pathway by specific interruption of YAP-TEAD interaction using cyclic YAP-like peptides., Zhou Z, Hu T, Xu Z, Lin Z, Zhang Z, Feng T, Zhu L, Rong Y, Shen H, Luk JM, Zhang X, Qin N, FASEB J. 2015 Feb;29(2):724-32. doi: 10.1096/fj.14-262980. Epub 2014 Nov 10. PMID:25384421
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4re1.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (4re1.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4RE1
  • CSU: Contacts of Structural Units for 4RE1
  • Structure Factors (2053 Kb)
  • Retrieve 4RE1 in mmCIF format [Save to disk]
  • Re-refined 4re1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RE1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RE1, from MSDmotif at EBI
  • Fold representative 4re1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4re1_A] [4re1] [4re1_D] [4re1_C] [4re1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RE1
  • Community annotation for 4RE1 at PDBWiki (http://pdbwiki.org)

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