4RED Transferase date Sep 22, 2014
title Crystal Structure Of Human Ampk Alpha1 Kd-Aid With K43a Muta
authors X.E.Zhou, J.Ke, X.Li, L.Wang, X.Gu, P.W.De Waal, M.H.E.Tan, D.Wang, H.E.Xu, K.Melcher
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit
Chain: A, B
Fragment: Human Ampk Kd-Aid, Unp Residues 22-362
Synonym: Ampk Subunit Alpha-1, Acetyl-Coa Carboxylase Kinas Kinase, Hydroxymethylglutaryl-Coa Reductase Kinase, Hmgcr K Tau-Protein Kinase Prkaa1;
Ec: 2.7.11.1, 2.7.11.27, 2.7.11.31, 2.7.11.26
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ampk Alpha1 (11-353), Ampk1, Prkaa1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: I 41 2 2
R_factor 0.230 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.532 119.532 215.639 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of AMPK regulation by adenine nucleotides and glycogen., Li X, Wang L, Zhou XE, Ke J, de Waal PW, Gu X, Tan MH, Wang D, Wu D, Xu HE, Melcher K, Cell Res. 2014 Nov 21. doi: 10.1038/cr.2014.150. PMID:25412657
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (4red.pdb1.gz) 214 Kb
  • Biological Unit Coordinates (4red.pdb2.gz) 108 Kb
  • Biological Unit Coordinates (4red.pdb3.gz) 108 Kb
  • CSU: Contacts of Structural Units for 4RED
  • Structure Factors (285 Kb)
  • Retrieve 4RED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RED from S2C, [Save to disk]
  • Re-refined 4red structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RED
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RED, from MSDmotif at EBI
  • Fold representative 4red from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4red_B] [4red_A] [4red]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RED: [S_TKc ] by SMART
  • Other resources with information on 4RED
  • Community annotation for 4RED at PDBWiki (http://pdbwiki.org)

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