OCA Atlas for 4RFE

4RFE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, GOL, SO4

enzyme

Primary reference

Co-crystal structures of antibody N60-i3 and antibody JR4 in complex with gp120 define more Cluster A epitopes involved in effective antibody-dependent effector function against HIV-1., Gohain N, Tolbert WD, Acharya P, Yu L, Liu T, Zhao P, Orlandi C, Visciano ML, Kamin-Lewis R, Sajadi MM, Martin L, Robinson JE, Kwong PD, DeVico AL, Ray K, Lewis GK, Pazgier M, J Virol. 2015 Jun 17. pii: JVI.01232-15. PMID:26085162

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]

Biological Unit Coordinates (4rfe.pdb1.gz) 75 Kb

Biological Unit Coordinates (4rfe.pdb2.gz) 75 Kb

Biological Unit Coordinates (4rfe.pdb3.gz) 75 Kb

Biological Unit Coordinates (4rfe.pdb4.gz) 75 Kb

LPC: Ligand-Protein Contacts for 4RFE

CSU: Contacts of Structural Units for 4RFE

Structure Factors (2880 Kb)

Retrieve 4RFE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4RFE from S2C, [Save to disk]

Re-refined 4rfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RFE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rfe] [4rfe_A] [4rfe_B] [4rfe_C] [4rfe_D] [4rfe_E] [4rfe_F] [4rfe_H] [4rfe_L]

SWISS-PROT database:

Domains found in 4RFE: [IG_like] [IGv ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]