4RI9 FAN1 Nuclease bound to 5' phosphorylated p(dT)/3'(dT-dT-dT-dT-dT-dT-dT-dT) double flap DNA date
authors Pavletich, N.P., Wang, R.
compound source
symmetry
R_factor
R_Free 0.26606
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand BA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1., Wang R, Persky NS, Yoo B, Ouerfelli O, Smogorzewska A, Elledge SJ, Pavletich NP, Science. 2014 Nov 28;346(6213):1127-30. doi: 10.1126/science.1258973. PMID:25430771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (4ri9.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (4ri9.pdb2.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 4RI9
  • CSU: Contacts of Structural Units for 4RI9
  • Structure Factors (378 Kb)
  • Retrieve 4RI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RI9 from S2C, [Save to disk]
  • Re-refined 4ri9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RI9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RI9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ri9_W] [4ri9_T] [4ri9_B] [4ri9_U] [4ri9_Z] [4ri9_S] [4ri9_V] [4ri9] [4ri9_X] [4ri9_Y] [4ri9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RI9: [VRR_NUC ] by SMART
    • Other resources with information on 4RI9
  • Community annotation for 4RI9 at PDBWiki (http://pdbwiki.org)

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