4RKK Structure of a product bound phosphatase date
authors Kooi, C.W.Vander.
compound source
symmetry
R_factor
R_Free 0.21053
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand GLC, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural Mechanism of Laforin Function in Glycogen Dephosphorylation and Lafora Disease., Raththagala M, Brewer MK, Parker MW, Sherwood AR, Wong BK, Hsu S, Bridges TM, Paasch BC, Hellman LM, Husodo S, Meekins DA, Taylor AO, Turner BD, Auger KD, Dukhande VV, Chakravarthy S, Sanz P, Woods VL Jr, Li S, Vander Kooi CW, Gentry MS, Mol Cell. 2014 Dec 23. pii: S1097-2765(14)00915-0. doi:, 10.1016/j.molcel.2014.11.020. PMID:25544560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (4rkk.pdb1.gz) 216 Kb
  • LPC: Ligand-Protein Contacts for 4RKK
  • CSU: Contacts of Structural Units for 4RKK
  • Structure Factors (685 Kb)
  • Retrieve 4RKK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RKK from S2C, [Save to disk]
  • Re-refined 4rkk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RKK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RKK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RKK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rkk_A] [4rkk_C] [4rkk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4RKK: [CBM_2] [PTPc_DSPc ] by SMART
    • Other resources with information on 4RKK
  • Community annotation for 4RKK at PDBWiki (http://pdbwiki.org)

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