4RNK Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAAATTTGGAG) date
authors Saoji, M.M., Paukstelis, P.J.
compound source
symmetry
R_factor
R_Free 0.23930
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.08
ligand MG enzyme
Primary referenceProbing the role of sequence in the assembly of three-dimensional DNA crystals., Saoji M, Zhang D, Paukstelis PJ, Biopolymers. 2015 May 26. doi: 10.1002/bip.22688. PMID:26015367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (4rnk.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 4RNK
  • CSU: Contacts of Structural Units for 4RNK
  • Structure Factors (57 Kb)
  • Retrieve 4RNK in mmCIF format [Save to disk]
  • Re-refined 4rnk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RNK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RNK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RNK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rnk] [4rnk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RNK
  • Community annotation for 4RNK at PDBWiki (http://pdbwiki.org)

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