4RNO Crystal structure of human polymerase eta extending an abasic site-dA pair by inserting dCTP opposite template G date
authors Patra, A., Egli, M.
compound source
symmetry
R_factor
R_Free 0.2816
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.82
ligand 3DR, CA, DCP, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Kinetic Analysis of Nucleoside Triphosphate Incorporation Opposite an Abasic Site by Human Translesion DNA Polymerase eta., Patra A, Zhang Q, Lei L, Su Y, Egli M, Guengerich FP, J Biol Chem. 2015 Mar 27;290(13):8028-38. doi: 10.1074/jbc.M115.637561. Epub 2015, Feb 9. PMID:25666608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4rno.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 4RNO
  • CSU: Contacts of Structural Units for 4RNO
  • Structure Factors (277 Kb)
  • Retrieve 4RNO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RNO from S2C, [Save to disk]
  • Re-refined 4rno structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RNO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RNO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RNO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rno_T] [4rno_A] [4rno_P] [4rno]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RNO
  • Community annotation for 4RNO at PDBWiki (http://pdbwiki.org)

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