4RRV	Transferase Transferase Inhibitor	date	Nov 06, 2014
title	Crystal Structure Of Pdk1 In Complex With Atp And Piftide
authors	T.J.Rettenmaier, J.A.Wells
compound		source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1 Chain: A Fragment: Catalytic Domain (Unp Residues 50-359) Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdk1, Pdpk1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac Htb
Molecule: Serinethreonine-Protein Kinase N2 Chain: B Fragment: Piftide (Prk2 Hydrophobic Motif, Unp Residues 969 Synonym: Pkn Gamma, Protein Kinase C-Like 2, Protein-Kinase Kinase 2; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.134 R_Free 0.163
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.973 44.536 47.799 90.00 101.40 90.00
method	X-Ray Diffraction	resolution	1.41 Å
ligand	ATP, GOL, SEP	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A small-molecule mimic of a peptide docking motif inhibits the protein kinase PDK1., Rettenmaier TJ, Sadowsky JD, Thomsen ND, Chen SC, Doak AK, Arkin MR, Wells JA, Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18590-5. doi:, 10.1073/pnas.1415365112. Epub 2014 Dec 17. PMID:25518860

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk] Biological Unit Coordinates (4rrv.pdb1.gz) 161 Kb LPC: Ligand-Protein Contacts for 4RRV CSU: Contacts of Structural Units for 4RRV Structure Factors (707 Kb) Retrieve 4RRV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4RRV from S2C, [Save to disk] Re-refined 4rrv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RRV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4RRV

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4RRV, from MSDmotif at EBI Fold representative 4rrv from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rrv_A] [4rrv] [4rrv_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4RRV: [S_TKc ] by SMART

Other resources with information on 4RRV

Community annotation for 4RRV at PDBWiki (http://pdbwiki.org)

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