4RSU Immune System date Nov 11, 2014
title Crystal Structure Of The Light And Hvem Complex
authors W.Liu, U.A.Ramagoal, D.Himmel, J.B.Bonanno, S.G.Nathenson, S.C.Al To-Animals: The Immune Function Network (Ifn), New York Stru Genomics Research Consortium (Nysgrc)
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 1 Form;
Chain: A, B, C, G, H, I
Fragment: Extracellular Domain, Residues 83-240
Synonym: Herpes Virus Entry Mediator Ligand, Hvem-L, Herpes Entry Mediator Ligand, Tumor Necrosis Factor Ligand Superfa Member 14;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfsf14, Hveml, Light, Unq391pro726
Expression_system: Drosophila
Expression_system_common: Fruit Flies
Expression_system_taxid: 7215
Expression_system_strain: S2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbiphisv5

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: D, E, F, J, K, L
Fragment: Tnfr-Cys 1-3 Repeats, Residues 39-162
Synonym: Herpes Virus Entry Mediator A, Herpesvirus Entry M Hvea, Tumor Necrosis Factor Receptor-Like 2, Tr2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf14, Hvea, Hvem, Unq329pro509
Expression_system: Drosophila
Expression_system_common: Fruit Flies
Expression_system_taxid: 7215
Expression_system_strain: S2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbiphisv5
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.651 113.604 163.279 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, A, C, I, G, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (476 Kb) [Save to disk]
  • Biological Unit Coordinates (4rsu.pdb1.gz) 464 Kb
  • Biological Unit Coordinates (4rsu.pdb2.gz) 231 Kb
  • Biological Unit Coordinates (4rsu.pdb3.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 4RSU
  • CSU: Contacts of Structural Units for 4RSU
  • Structure Factors (1767 Kb)
  • Retrieve 4RSU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RSU from S2C, [Save to disk]
  • Re-refined 4rsu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RSU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RSU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RSU, from MSDmotif at EBI
  • Fold representative 4rsu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rsu_F] [4rsu_K] [4rsu_E] [4rsu_D] [4rsu_H] [4rsu] [4rsu_C] [4rsu_B] [4rsu_I] [4rsu_J] [4rsu_G] [4rsu_L] [4rsu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4RSU: [TNF] [TNFR ] by SMART
  • Other resources with information on 4RSU
  • Community annotation for 4RSU at PDBWiki (http://pdbwiki.org)

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