4RTT Cyrstal structure of SLIT-ROBO Rho GTPase-activating protein 2 fragment date
authors Opatowsky, Y., Guez-Hadad, J.
compound source
symmetry
R_factor
R_Free 0.25944
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.87
ligand SO4 enzyme
Primary referenceThe Neuronal Migration Factor srGAP2 Achieves Specificity in Ligand Binding through a Two-Component Molecular Mechanism., Guez-Haddad J, Sporny M, Sasson Y, Gevorkyan-Airapetov L, Lahav-Mankovski N, Margulies D, Radzimanowski J, Opatowsky Y, Structure. 2015 Nov 3;23(11):1989-2000. doi: 10.1016/j.str.2015.08.009. Epub 2015, Sep 10. PMID:26365803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (4rtt.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (4rtt.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4RTT
  • CSU: Contacts of Structural Units for 4RTT
  • Structure Factors (245 Kb)
  • Retrieve 4RTT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RTT from S2C, [Save to disk]
  • Re-refined 4rtt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RTT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RTT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rtt] [4rtt_B] [4rtt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RTT: [SH3 ] by SMART
    • Other resources with information on 4RTT
  • Community annotation for 4RTT at PDBWiki (http://pdbwiki.org)

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