4RUB	Lyase(Carbon-Carbon)	date	May 25, 1990
title	A Crystal Form Of Ribulose-1,5-Bisphosphate Carboxylase(Slas Oxygenase From Nicotiana Tabacum In The Activated State
authors	H.Schreuder, D.Cascio, P.M.G.Curmi, D.Eisenberg
compound		source
Molecule: Ribulose 1,5-Bisphosphate Carboxylaseoxygenase ( Chain: A, B, C, D Ec: 4.1.1.39 Engineered: Yes		Organism_scientific: Nicotiana Tabacum Organism_common: Common Tobacco Organism_taxid: 4097
Molecule: Ribulose 1,5-Bisphosphate Carboxylaseoxygenase ( Chain: S, T, U, V Ec: 4.1.1.39 Engineered: Yes		Organism_scientific: Nicotiana Tabacum Organism_common: Common Tobacco Organism_taxid: 4097
symmetry	Space Group: P 31 2 1	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 204.600 204.600 117.400 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CAP, FMT, MG	enzyme	Lyase E.C.4.1.1.39 BRENDA
related structures	by homologous chain: 1RLC
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	A crystal form of ribulose-1,5-bisphosphate carboxylase/oxygenase from Nicotiana tabacum in the activated state., Suh SW, Cascio D, Chapman MS, Eisenberg D, J Mol Biol 1987 Sep 20;197(2):363-5. PMID:3681999

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (381 Kb) [Save to disk] Biological Unit Coordinates (4rub.pdb1.gz) 741 Kb LPC: Ligand-Protein Contacts for 4RUB CSU: Contacts of Structural Units for 4RUB Likely Quarternary Molecular Structure file(s) for 4RUB Retrieve 4RUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4RUB from S2C, [Save to disk]

View 4RUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4RUB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4RUB, from MSDmotif at EBI Genome occurence of 4RUB's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d4ruba1, region A:148-473 [Jmol] [rasmolscript] [script source]     - Domain d4ruba2, region A:9-147 [Jmol] [rasmolscript] [script source]     - Domain d4rubb1, region B:148-473 [Jmol] [rasmolscript] [script source]     - Domain d4rubb2, region B:9-147 [Jmol] [rasmolscript] [script source]     - Domain d4rubc1, region C:148-473 [Jmol] [rasmolscript] [script source]     - Domain d4rubc2, region C:9-147 [Jmol] [rasmolscript] [script source]     - Domain d4rubd1, region D:148-473 [Jmol] [rasmolscript] [script source]     - Domain d4rubd2, region D:9-147 [Jmol] [rasmolscript] [script source]     - Domain d4rubs_, region S [Jmol] [rasmolscript] [script source]     - Domain d4rubt_, region T [Jmol] [rasmolscript] [script source]     - Domain d4rubu_, region U [Jmol] [rasmolscript] [script source]     - Domain d4rubv_, region V [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rub_U] [4rub_A] [4rub_T] [4rub_D] [4rub_S] [4rub_B] [4rub_V] [4rub_C] [4rub] SWISS-PROT database: [P00876] [P69249] Domain organization of [RBL_TOBAC] [RBS_TOBAC] by SWISSPFAM Domain found in 4RUB: [RuBisCO_small ] by SMART

Other resources with information on 4RUB

Community annotation for 4RUB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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