4RWF Membrane Protein Hormone date Dec 03, 2014
title Crystal Structure Of The Clr:Ramp2 Extracellular Domain Hete With Bound Adrenomedullin
authors J.Booe, A.Pioszak
compound source
Molecule: Maltose Transporter Subunit, Receptor Activity-Mo Protein 2, Calcitonin Gene-Related Peptide Type 1 Receptor Protein;
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_common: Human
Organism_taxid: 83333, 9606
Strain: K12
Gene: Male, Ce10_4748, Ramp2, Calcrl, Cgrpr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami B De3

Molecule: Adrenomedullin
Chain: B
Fragment: Residues 119-146
Synonym: Cgrp Type 1 Receptor, Calcitonin Receptor-Like Rec
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.454 84.283 115.764 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand EDO, MAL, NH2 enzyme
Gene CE10
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural Basis for Receptor Activity-Modifying Protein-Dependent Selective Peptide Recognition by a G Protein-Coupled Receptor., Booe JM, Walker CS, Barwell J, Kuteyi G, Simms J, Jamaluddin MA, Warner ML, Bill RM, Harris PW, Brimble MA, Poyner DR, Hay DL, Pioszak AA, Mol Cell. 2015 May 12. pii: S1097-2765(15)00300-7. doi:, 10.1016/j.molcel.2015.04.018. PMID:25982113
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (4rwf.pdb1.gz) 195 Kb
  • LPC: Ligand-Protein Contacts for 4RWF
  • CSU: Contacts of Structural Units for 4RWF
  • Structure Factors (787 Kb)
  • Retrieve 4RWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RWF from S2C, [Save to disk]
  • Re-refined 4rwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RWF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RWF, from MSDmotif at EBI
  • Fold representative 4rwf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rwf_B] [4rwf_A] [4rwf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RWF: [HormR ] by SMART
  • Other resources with information on 4RWF
  • Community annotation for 4RWF at PDBWiki (http://pdbwiki.org)

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