OCA Atlas for 4RZC

4RZC

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

M6P, SO4

enzyme

Primary reference

Single-chain antibody-fragment M6P-1 possesses a mannose 6-phosphate monosaccharide-specific binding pocket that distinguishes N-glycan phosphorylation in a branch-specific mannerdagger., Blackler RJ, Evans DW, Smith DF, Cummings RD, Brooks CL, Braulke T, Liu X, Evans SV, Muller-Loennies S, Glycobiology. 2015 Oct 26. pii: cwv093. PMID:26503547

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]

Biological Unit Coordinates (4rzc.pdb1.gz) 72 Kb

Biological Unit Coordinates (4rzc.pdb2.gz) 73 Kb

Biological Unit Coordinates (4rzc.pdb3.gz) 73 Kb

Biological Unit Coordinates (4rzc.pdb4.gz) 74 Kb

LPC: Ligand-Protein Contacts for 4RZC

CSU: Contacts of Structural Units for 4RZC

Structure Factors (379 Kb)

Retrieve 4RZC in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4RZC from S2C, [Save to disk]

Re-refined 4rzc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RZC in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rzc] [4rzc_A] [4rzc_B] [4rzc_C] [4rzc_D] [4rzc_E] [4rzc_F] [4rzc_H] [4rzc_L]

SWISS-PROT database:

Domain found in 4RZC: [IGv ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]