4S05 Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA box DNA date
authors Hsiao, C.D., Weng, T.H., Li, Y.C.
compound source
symmetry
R_factor
R_Free 0.2285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand BEF, MG enzyme
Gene N559
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and dynamics of polymyxin-resistance-associated response regulator PmrA in complex with promoter DNA., Lou YC, Weng TH, Li YC, Kao YF, Lin WF, Peng HL, Chou SH, Hsiao CD, Chen C, Nat Commun. 2015 Nov 13;6:8838. doi: 10.1038/ncomms9838. PMID:26564787
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (4s05.pdb1.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 4S05
  • CSU: Contacts of Structural Units for 4S05
  • Structure Factors (357 Kb)
  • Retrieve 4S05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S05 from S2C, [Save to disk]
  • Re-refined 4s05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4S05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4S05
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s05] [4s05_C] [4s05_B] [4s05_D] [4s05_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4S05: [REC] [Trans_reg_C ] by SMART
    • Other resources with information on 4S05
  • Community annotation for 4S05 at PDBWiki (http://pdbwiki.org)

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