4S0U Immune System date Jan 06, 2015
title Crystal Structure Of Nkg2d In Complex With Ulbp6
authors F.Mohammed, B.E.Willcox
compound source
Molecule: Nkg2-D Type II Integral Membrane Protein
Chain: A, B
Fragment: Unp Residues 90-215
Synonym: Killer Cell Lectin-Like Receptor Subfamily K Membe Cell Receptor D, Nkg2-D-Activating Nk Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: D12s2489e, Klrk1, Nkg2d
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23a

Molecule: Retinoic Acid Early Transcript 1l Protein
Chain: C
Fragment: Unp Residues 29-203
Synonym: Ulbp6
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Raet1l, Ulbp6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23a
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.300 80.000 73.200 90.00 106.50 90.00
method X-Ray Diffractionresolution 2.35 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4s0u.pdb1.gz) 72 Kb
  • CSU: Contacts of Structural Units for 4S0U
  • Structure Factors (364 Kb)
  • Retrieve 4S0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S0U from S2C, [Save to disk]
  • Re-refined 4s0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4S0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4S0U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4s0u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s0u_C] [4s0u_B] [4s0u] [4s0u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4S0U: [CLECT ] by SMART
  • Other resources with information on 4S0U
  • Community annotation for 4S0U at PDBWiki (http://pdbwiki.org)

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