4S2Q Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element date
authors Vivekanandan, S., Moovarkumudalvan, B., Lescar, J., Kolatkar, P.R.
compound source
symmetry
R_factor
R_Free 0.2688
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4s2q.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 4S2Q
  • Structure Factors (113 Kb)
  • Retrieve 4S2Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S2Q from S2C, [Save to disk]
  • Re-refined 4s2q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4S2Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4S2Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s2q_D] [4s2q] [4s2q_A] [4s2q_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4S2Q: [HMG ] by SMART
    • Other resources with information on 4S2Q
  • Community annotation for 4S2Q at PDBWiki (http://pdbwiki.org)

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