4TMU Crystal structure of RecQ catalytic core from C. sakazakii bound to DNA date
authors Manthei, K.A., Keck, J.L.
compound source
symmetry
R_factor
R_Free 0.23253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand ZN enzyme
Gene ESA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural mechanisms of DNA binding and unwinding in bacterial RecQ helicases., Manthei KA, Hill MC, Burke JE, Butcher SE, Keck JL, Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4292-7. doi:, 10.1073/pnas.1416746112. Epub 2015 Mar 23. PMID:25831501
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (4tmu.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4TMU
  • CSU: Contacts of Structural Units for 4TMU
  • Structure Factors (547 Kb)
  • Retrieve 4TMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TMU from S2C, [Save to disk]
  • Re-refined 4tmu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TMU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TMU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tmu_B] [4tmu_A] [4tmu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4TMU: [DEXDc] [HELICc] [RQC ] by SMART
    • Other resources with information on 4TMU
  • Community annotation for 4TMU at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science