4TN7 Crystal structure of mouse KDM2A-H3K36ME-NO complex date
authors Cheng, Z.
compound source
symmetry
R_factor
R_Free 0.2794
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand FE, MLZ, NO, SIN enzyme
Primary referenceA molecular threading mechanism underlies Jumonji lysine demethylase KDM2A regulation of methylated H3K36., Cheng Z, Cheung P, Kuo AJ, Yukl ET, Wilmot CM, Gozani O, Patel DJ, Genes Dev. 2014 Aug 15;28(16):1758-71. doi: 10.1101/gad.246561.114. PMID:25128496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (4tn7.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (4tn7.pdb2.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4TN7
  • CSU: Contacts of Structural Units for 4TN7
  • Structure Factors (697 Kb)
  • Retrieve 4TN7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TN7 from S2C, [Save to disk]
  • Re-refined 4tn7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TN7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TN7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TN7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tn7_B] [4tn7_A] [4tn7] [4tn7_F] [4tn7_C] [4tn7_E] [4tn7_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4TN7: [JmjC ] by SMART
    • Other resources with information on 4TN7
  • Community annotation for 4TN7 at PDBWiki (http://pdbwiki.org)

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