4TNA FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE date
authors Hingerty, B.E., Brown, R.S., Jack, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 1MA, 2MG, 5MC, 5MU, 7MG, H2U, M2G, MG, OMC, OMG, PSU, YG enzyme
note 4TNA (Molecule of the Month:pdb15)supersedes 3TNA
Primary referenceFurther refinement of the structure of yeast tRNAPhe., Hingerty B, Brown RS, Jack A, J Mol Biol 1978 Sep 25;124(3):523-34. PMID:361973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (4tna.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 4TNA
  • CSU: Contacts of Structural Units for 4TNA
  • Likely Quarternary Molecular Structure file(s) for 4TNA
  • Structure Factors (59 Kb)
  • Retrieve 4TNA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TNA from S2C, [Save to disk]
  • Re-refined 4tna structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TNA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TNA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TNA, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tna_A] [4tna]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4TNA
  • Community annotation for 4TNA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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