4TNT Structure of the human mineralocorticoid receptor in complex with DNA date
authors Hudson, W.H., Ortlund, E.A.
compound source
symmetry
R_factor
R_Free 0.2584
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.39
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the mineralocorticoid receptor DNA binding domain in complex with DNA., Hudson WH, Youn C, Ortlund EA, PLoS One. 2014 Sep 4;9(9):e107000. doi: 10.1371/journal.pone.0107000. eCollection, 2014. PMID:25188500
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4tnt.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4TNT
  • CSU: Contacts of Structural Units for 4TNT
  • Structure Factors (231 Kb)
  • Retrieve 4TNT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TNT from S2C, [Save to disk]
  • Re-refined 4tnt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TNT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TNT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TNT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tnt_A] [4tnt_C] [4tnt] [4tnt_B] [4tnt_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4TNT: [ZnF_C4 ] by SMART
  • Other resources with information on 4TNT
  • Community annotation for 4TNT at PDBWiki (http://pdbwiki.org)

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