4TQ0 Protein Binding date Jun 10, 2014
title Crystal Structure Of Human Atg5-Atg16n69
authors J.H.Kim, S.B.Hong, H.K.Song
compound source
Molecule: Autophagy Protein 5
Chain: A, C, E
Synonym: Apg5-Like,Apoptosis-Specific Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg5, Apg5l, Asp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Autophagy-Related Protein 16-1
Chain: B, D, F
Fragment: Unp Residues 1-69
Synonym: Apg16-Like 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg16l1, Apg16l, Unq9393pro34307
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 41 21 2
R_factor 0.203 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.094 93.094 245.577 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


Primary referenceInsights into autophagosome maturation revealed by the structures of ATG5 with its interacting partners., Kim JH, Hong SB, Lee JK, Han S, Roh KH, Lee KE, Kim YK, Choi EJ, Song HK, Autophagy. 2015 Jan 2;11(1):75-87. doi: 10.4161/15548627.2014.984276. PMID:25484072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (4tq0.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4tq0.pdb2.gz) 51 Kb
  • Biological Unit Coordinates (4tq0.pdb3.gz) 50 Kb
  • CSU: Contacts of Structural Units for 4TQ0
  • Structure Factors (501 Kb)
  • Retrieve 4TQ0 in mmCIF format [Save to disk]
  • Re-refined 4tq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TQ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4TQ0, from MSDmotif at EBI
  • Fold representative 4tq0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tq0_B] [4tq0_F] [4tq0_A] [4tq0_C] [4tq0_E] [4tq0_D] [4tq0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4TQ0
  • Community annotation for 4TQ0 at PDBWiki (http://pdbwiki.org)

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