4TQR	Transferase Dna	date	Jun 11, 2014
title	Ternary Complex Of Y-Family Dna Polymerase Dpo4 With (5'S)-8 2'-Deoxyguanosine And Dttp
authors	L.Zhao
compound		source
Molecule: Dna Polymerase Iv Chain: A Fragment: Unp Residues 1-342 Synonym: Pol Iv Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 273057 Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2 Gene: Dbh, Dpo4, Sso2448 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Gpgpgpgpgpapapgpgpaptpt)-3' Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Tpcpapcp(2lf) Pgpapaptpcpcptptpcpcpcpcpc)-3'); Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.182 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.537 89.406 112.390 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.58 Å
ligand	2LF, CA, DOC, MG, TTP	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Kinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-Induced DNA Replication Stalling., Xu W, Ouellette AM, Wawrzak Z, Shriver SJ, Anderson SM, Zhao L, Biochemistry. 2015 Jan 13. PMID:25569151

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk] Biological Unit Coordinates (4tqr.pdb1.gz) 149 Kb LPC: Ligand-Protein Contacts for 4TQR CSU: Contacts of Structural Units for 4TQR Structure Factors (1226 Kb) Retrieve 4TQR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4TQR from S2C, [Save to disk] Re-refined 4tqr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4TQR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4TQR

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4TQR, from MSDmotif at EBI Fold representative 4tqr from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4tqr] [4tqr_A] [4tqr_P] [4tqr_T] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4TQR

Community annotation for 4TQR at PDBWiki (http://pdbwiki.org)

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