4TQR Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTP date
authors Zhao, L.
compound source
R_Free 0.2022
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.58
ligand 2LF, CA, DOC, MG, TTP enzyme

Primary referenceKinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-Induced DNA Replication Stalling., Xu W, Ouellette AM, Wawrzak Z, Shriver SJ, Anderson SM, Zhao L, Biochemistry. 2015 Jan 13. PMID:25569151
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (4tqr.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 4TQR
  • CSU: Contacts of Structural Units for 4TQR
  • Structure Factors (1226 Kb)
  • Retrieve 4TQR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TQR from S2C, [Save to disk]
  • Re-refined 4tqr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TQR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TQR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4TQR, from MSDmotif at EBI
  • Fold representative 4tqr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tqr] [4tqr_A] [4tqr_P] [4tqr_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4TQR
  • Community annotation for 4TQR at PDBWiki (http://pdbwiki.org)

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