4TVW Resorufin ligase with bound resorufin-AMP analog date
authors Goldman, P.J., Drennan, C.L.
compound source
symmetry
R_factor
R_Free 0.2484
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand 37P enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceComputational design of a red fluorophore ligase for site-specific protein labeling in living cells., Liu DS, Nivon LG, Richter F, Goldman PJ, Deerinck TJ, Yao JZ, Richardson D, Phipps WS, Ye AZ, Ellisman MH, Drennan CL, Baker D, Ting AY, Proc Natl Acad Sci U S A. 2014 Oct 13. pii: 201404736. PMID:25313043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (4tvw.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (4tvw.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (4tvw.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (4tvw.pdb4.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4TVW
  • CSU: Contacts of Structural Units for 4TVW
  • Structure Factors (341 Kb)
  • Retrieve 4TVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TVW from S2C, [Save to disk]
  • Re-refined 4tvw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TVW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TVW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tvw_C] [4tvw_D] [4tvw] [4tvw_A] [4tvw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4TVW
  • Community annotation for 4TVW at PDBWiki (http://pdbwiki.org)

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