4TVZ Protein Binding date Jun 29, 2014
title Crystal Structure Of Scarb2 In Neural Condition (Ph7.5)
authors M.H.Dang, X.X.Wang, Z.H.Rao
compound source
Molecule: Scavenger Receptor Class B Member 2
Chain: A, B
Fragment: Ectodomain, Unp Residue 37-430
Synonym: Lysosome Membrane Protein 2, 85 Kda Lysosomal Memb Sialoglycoprotein, Lgp85, Cd36 Antigen-Like 2, Lysosome Mem Protein II, Limp II;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scarb2, Cd36l2, Limp2, Limpii
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phl_sec
symmetry Space Group: C 1 2 1
R_factor 0.259 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.960 63.723 219.925 90.00 99.75 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular mechanism of SCARB2-mediated attachment and uncoating of EV71., Dang M, Wang X, Wang Q, Wang Y, Lin J, Sun Y, Li X, Zhang L, Lou Z, Wang J, Rao Z, Protein Cell. 2014 Sep;5(9):692-703. doi: 10.1007/s13238-014-0087-3. Epub 2014, Jul 2. PMID:24986489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (4tvz.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (4tvz.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4TVZ
  • CSU: Contacts of Structural Units for 4TVZ
  • Structure Factors (223 Kb)
  • Retrieve 4TVZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TVZ from S2C, [Save to disk]
  • Re-refined 4tvz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TVZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TVZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4tvz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tvz] [4tvz_A] [4tvz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4TVZ
  • Community annotation for 4TVZ at PDBWiki (http://pdbwiki.org)

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