4TWP The crystal structure of human abl1 T315I gatekeeper mutant kinase domain in complex with axitinib date
authors Johnson, E., McTigue, M., Cronin, C.N.
compound source
symmetry
R_factor
R_Free 0.2414
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand AXI, NA, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAxitinib effectively inhibits BCR-ABL1(T315I) with a distinct binding conformation., Pemovska T, Johnson E, Kontro M, Repasky GA, Chen J, Wells P, Cronin CN, McTigue M, Kallioniemi O, Porkka K, Murray BW, Wennerberg K, Nature. 2015 Feb 9. doi: 10.1038/nature14119. PMID:25686603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4twp.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (4twp.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4TWP
  • CSU: Contacts of Structural Units for 4TWP
  • Structure Factors (627 Kb)
  • Retrieve 4TWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TWP from S2C, [Save to disk]
  • Re-refined 4twp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TWP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TWP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4twp_A] [4twp_B] [4twp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4TWP: [TyrKc ] by SMART
    • Other resources with information on 4TWP
  • Community annotation for 4TWP at PDBWiki (http://pdbwiki.org)

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