4TXJ Crystal structure of uridine phosphorylase from Schistosoma mansoni in complex with thymidine date
authors Torini, J., Marinho, A., Romanello, L., Cassago, A., DeMarco, R., Brandao-Neto, J., Pereira, H.M.
compound source
symmetry
R_factor
R_Free 0.2109
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.66
ligand SO4, THM enzyme
Gene SMP
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAnalysis of two Schistosoma mansoni uridine phosphorylases isoforms suggests the emergence of a protein with a non-canonical function., da Silva Neto AM, Torini de Souza JR, Romanelo L, Cassago A, Serrao VH, DeMarco R, Brandao-Neto J, Garratt RC, Pereira HD, Biochimie. 2016 Feb 18. pii: S0300-9084(16)00050-X. doi:, 10.1016/j.biochi.2016.02.007. PMID:26898674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (382 Kb) [Save to disk]
  • Biological Unit Coordinates (4txj.pdb1.gz) 189 Kb
  • Biological Unit Coordinates (4txj.pdb2.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 4TXJ
  • CSU: Contacts of Structural Units for 4TXJ
  • Structure Factors (8083 Kb)
  • Retrieve 4TXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TXJ from S2C, [Save to disk]
  • Re-refined 4txj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TXJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4txj_A] [4txj_C] [4txj_B] [4txj_D] [4txj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4TXJ
  • Community annotation for 4TXJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science