4TY6 Factor XIa in complex with the inhibitor 4-{2-[(1S)-1-({[trans-4-(aminomethyl)cyclohexyl]carbonyl}amino)-2-phenylethyl]-1H-imidazol-4-yl}benzamide date
authors Wei, A.
compound source
symmetry
R_factor
R_Free 0.2006
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand 39D, EDO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePhenylimidazoles as Potent and Selective Inhibitors of Coagulation Factor XIa with in Vivo Antithrombotic Activity., Hangeland JJ, Friends TJ, Rossi KA, Smallheer JM, Wang C, Sun Z, Corte JR, Fang T, Wong PC, Rendina AR, Barbera FA, Bozarth JM, Luettgen JM, Watson CA, Zhang G, Wei A, Ramamurthy V, Morin PE, Bisacchi GS, Subramaniam S, Arunachalam P, Mathur A, Seiffert DA, Wexler RR, Quan ML, J Med Chem. 2014 Dec 2. PMID:25405503
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4ty6.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4TY6
  • CSU: Contacts of Structural Units for 4TY6
  • Structure Factors (354 Kb)
  • Retrieve 4TY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TY6 from S2C, [Save to disk]
  • Re-refined 4ty6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TY6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TY6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ty6] [4ty6_A] [4ty6_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4TY6: [Tryp_SPc ] by SMART
    • Other resources with information on 4TY6
  • Community annotation for 4TY6 at PDBWiki (http://pdbwiki.org)

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