4TYM Crystal structure of purine nucleoside phosphorylase from Streptococcus agalactiae 2603V/R, NYSGRC Target 030935 date
authors Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Love, J., Fiser, A., Seidel, R., Bonanno, J.B., Almo, S.C., NYSGRC, New.York.Structural.Genomics.Research.Consortium.
compound source
symmetry
R_factor
R_Free 0.1926
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand CSO, MSE, SO4 enzyme
Gene SAG0083
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4tym.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (4tym.pdb2.gz) 461 Kb
  • LPC: Ligand-Protein Contacts for 4TYM
  • CSU: Contacts of Structural Units for 4TYM
  • Structure Factors (972 Kb)
  • Retrieve 4TYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TYM from S2C, [Save to disk]
  • Re-refined 4tym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TYM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TYM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tym_A] [4tym]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4TYM
  • Community annotation for 4TYM at PDBWiki (http://pdbwiki.org)

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