4TYM	Transferase	date	Jul 08, 2014
title	Crystal Structure Of Purine Nucleoside Phosphorylase From Streptococcus Agalactiae 2603vr, Nysgrc Target 030935
authors	V.N.Malashkevich, R.Bhosle, R.Toro, B.Hillerich, A.Gizzi, S.Garfo A.Kar, M.K.Chan, J.Lafluer, H.Patel, B.Matikainen, S.Chamala, S.L A.Celikgil, G.Villegas, B.Evans, J.Love, A.Fiser, R.Seidel, J.B.B S.C.Almo, New York Structural Genomics Research Consortium (
compound		source
Molecule: Purine Nucleoside Phosphorylase Deod-Type Chain: A Synonym: Pnp Ec: 2.4.2.1 Engineered: Yes		Organism_scientific: Streptococcus Agalactiae Lmg 15084 Organism_taxid: 1105274 Gene: Deod, Sag0083_03075 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Codon+Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry	Space Group: P 63 2 2	R_factor 0.166 R_Free 0.193
crystal cell	length a length b length c angle alpha angle beta angle gamma 156.552 156.552 52.090 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CSO, MSE, SO4	enzyme	Transferase E.C.2.4.2.1 BRENDA
Gene	SAG0083
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk] Biological Unit Coordinates (4tym.pdb1.gz) 80 Kb Biological Unit Coordinates (4tym.pdb2.gz) 472 Kb LPC: Ligand-Protein Contacts for 4TYM CSU: Contacts of Structural Units for 4TYM Structure Factors (972 Kb) Retrieve 4TYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4TYM from S2C, [Save to disk] Re-refined 4tym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4TYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4TYM

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4TYM, from MSDmotif at EBI Fold representative 4tym from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4tym_A] [4tym] SWISS-PROT database: Domain organization of by SWISSPFAM

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