4U0D Hexameric HIV-1 CA in complex with Nup153 peptide, P212121 crystal form date
authors Price, A.J., Jacques, D.A., James, L.C.
compound source
symmetry
R_factor
R_Free 0.2670
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceHost Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly., Price AJ, Jacques DA, McEwan WA, Fletcher AJ, Essig S, Chin JW, Halambage UD, Aiken C, James LC, PLoS Pathog. 2014 Oct 30;10(10):e1004459. doi: 10.1371/journal.ppat.1004459., eCollection 2014 Oct. PMID:25356722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (802 Kb) [Save to disk]
  • Biological Unit Coordinates (4u0d.pdb1.gz) 403 Kb
  • Biological Unit Coordinates (4u0d.pdb2.gz) 394 Kb
  • LPC: Ligand-Protein Contacts for 4U0D
  • CSU: Contacts of Structural Units for 4U0D
  • Structure Factors (4871 Kb)
  • Retrieve 4U0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U0D from S2C, [Save to disk]
  • Re-refined 4u0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U0D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U0D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u0d_Q] [4u0d_C] [4u0d_L] [4u0d_K] [4u0d_I] [4u0d_M] [4u0d] [4u0d_P] [4u0d_G] [4u0d_F] [4u0d_A] [4u0d_J] [4u0d_H] [4u0d_O] [4u0d_B] [4u0d_E] [4u0d_N] [4u0d_D] [4u0d_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4U0D
  • Community annotation for 4U0D at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science