4U0Y	Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA	date
authors	Fillenberg, S.B., Muller, Y.A.
compound		source
symmetry		R_factor R_Free 0.2294
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.91
ligand	CL	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR., Fillenberg SB, Grau FC, Seidel G, Muller YA, Nucleic Acids Res. 2015 Jan 6. pii: gku1374. PMID:25564531

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (4u0y.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 4U0Y CSU: Contacts of Structural Units for 4U0Y Structure Factors (260 Kb) Retrieve 4U0Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4U0Y from S2C, [Save to disk] Re-refined 4u0y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4U0Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4U0Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4U0Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4u0y_A] [4u0y_F] [4u0y_B] [4u0y_C] [4u0y] [4u0y_D] [4u0y_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4U0Y: [HTH_GNTR ] by SMART

Other resources with information on 4U0Y

Community annotation for 4U0Y at PDBWiki (http://pdbwiki.org)

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