4U1H HLA class I micropolymorphisms determine peptide-HLA landscape and dictate differential HIV-1 escape through identical epitopes date
authors Rizkallah, P.J., Cole, D.K., Fuller, A., Sewell, A.K.
compound source
symmetry
R_factor
R_Free 0.1944
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.59
ligand EDO, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

    • Primary referenceA molecular switch in immunodominant HIV-1-specific CD8 T-cell epitopes shapes differential HLA-restricted escape., Kloverpris HN, Cole DK, Fuller A, Carlson J, Beck K, Schauenburg AJ, Rizkallah PJ, Buus S, Sewell AK, Goulder P, Retrovirology. 2015 Feb 20;12(1):20. doi: 10.1186/s12977-015-0149-5. PMID:25808313
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (4u1h.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4U1H
  • CSU: Contacts of Structural Units for 4U1H
  • Structure Factors (3288 Kb)
  • Retrieve 4U1H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U1H from S2C, [Save to disk]
  • Re-refined 4u1h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U1H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U1H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U1H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u1h_C] [4u1h_B] [4u1h] [4u1h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4U1H: [IGc1 ] by SMART
    • Other resources with information on 4U1H
  • Community annotation for 4U1H at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science