4U1R ATP-bound structure of human platelet phosphofructokinase in an R-state, crystal form II date
authors Kloos, M., Straeter, N.
compound source
symmetry
R_factor
R_Free 0.19825
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand ATP, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of human platelet phosphofructokinase-1 locked in an activated conformation., Kloos M, Bruser A, Kirchberger J, Schoneberg T, Strater N, Biochem J. 2015 Aug 1;469(3):421-32. doi: 10.1042/BJ20150251. Epub 2015 Jun 11. PMID:26205495
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (956 Kb) [Save to disk]
  • Biological Unit Coordinates (4u1r.pdb1.gz) 947 Kb
  • LPC: Ligand-Protein Contacts for 4U1R
  • CSU: Contacts of Structural Units for 4U1R
  • Structure Factors (801 Kb)
  • Retrieve 4U1R in mmCIF format [Save to disk]
  • Re-refined 4u1r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U1R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U1R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U1R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u1r_A] [4u1r] [4u1r_B] [4u1r_C] [4u1r_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4U1R
  • Community annotation for 4U1R at PDBWiki (http://pdbwiki.org)

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