4YIR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


X


Primary referenceKinetic gating mechanism of DNA damage recognition by Rad4/XPC., Chen X, Velmurugu Y, Zheng G, Park B, Shim Y, Kim Y, Liu L, Van Houten B, He C, Ansari A, Min JH, Nat Commun. 2015 Jan 6;6:5849. doi: 10.1038/ncomms6849. PMID:25562780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • Biological Unit Coordinates (4yir.pdb1.gz) 325 Kb
  • CSU: Contacts of Structural Units for 4YIR
  • Structure Factors (340 Kb)
  • Retrieve 4YIR in mmCIF format [Save to disk]
  • Re-refined 4yir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yir] [4yir_A] [4yir_W] [4yir_X] [4yir_Y]
  • SWISS-PROT database:
  • Domains found in 4YIR: [BHD_1] [BHD_2] [BHD_3] [STI1] [TGc] [UBA ] by SMART

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