4U2X Ebola virus VP24 in complex with Karyopherin alpha 5 C-terminus date
authors Xu, W., Leung, D., Borek, D., Amarasinghe, G.
compound source
symmetry
R_factor
R_Free 0.2492
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.15
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceEbola Virus VP24 Targets a Unique NLS Binding Site on Karyopherin Alpha 5 to Selectively Compete with Nuclear Import of Phosphorylated STAT1., Xu W, Edwards MR, Borek DM, Feagins AR, Mittal A, Alinger JB, Berry KN, Yen B, Hamilton J, Brett TJ, Pappu RV, Leung DW, Basler CF, Amarasinghe GK, Cell Host Microbe. 2014 Aug 13;16(2):187-200. doi: 10.1016/j.chom.2014.07.008. PMID:25121748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (405 Kb) [Save to disk]
  • Biological Unit Coordinates (4u2x.pdb1.gz) 129 Kb
  • Biological Unit Coordinates (4u2x.pdb2.gz) 130 Kb
  • Biological Unit Coordinates (4u2x.pdb3.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 4U2X
  • CSU: Contacts of Structural Units for 4U2X
  • Structure Factors (648 Kb)
  • Retrieve 4U2X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U2X from S2C, [Save to disk]
  • Re-refined 4u2x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U2X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U2X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U2X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u2x_C] [4u2x_D] [4u2x_A] [4u2x_F] [4u2x] [4u2x_E] [4u2x_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4U2X: [ARM ] by SMART
    • Other resources with information on 4U2X
  • Community annotation for 4U2X at PDBWiki (http://pdbwiki.org)

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