4U5T Crystal Structure of VBP Leucine Zipper with Bound Arylstibonic Acid date
authors Stagno, J.R., Ji, X.
compound source
symmetry
R_factor
R_Free 0.2781
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
ligand 3CG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceP6981, an arylstibonic acid, is a novel low nanomolar inhibitor of cAMP response element-binding protein binding to DNA., Zhao J, Stagno JR, Varticovski L, Nimako E, Rishi V, McKinnon K, Akee R, Shoemaker RH, Ji X, Vinson C, Mol Pharmacol. 2012 Nov;82(5):814-23. doi: 10.1124/mol.112.080820. Epub 2012 Jul , 31. PMID:22851716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (4u5t.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 4U5T
  • CSU: Contacts of Structural Units for 4U5T
  • Structure Factors (32 Kb)
  • Retrieve 4U5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U5T from S2C, [Save to disk]
  • Re-refined 4u5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U5T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U5T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u5t] [4u5t_B] [4u5t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4U5T
  • Community annotation for 4U5T at PDBWiki (http://pdbwiki.org)

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