4U6P Structural mechanism of error-free bypass of major benzo[a]pyrene adduct by human polymerase kappa date
authors Jha, V.K., Ling, H.
compound source
symmetry
R_factor
R_Free 0.2390
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.59
ligand DCT, MG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and mechanism of error-free replication past the major benzo[a]pyrene adduct by human DNA polymerase kappa., Jha V, Bian C, Xing G, Ling H, Nucleic Acids Res. 2016 Mar 31. pii: gkw204. PMID:27034468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (4u6p.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (4u6p.pdb2.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 4U6P
  • CSU: Contacts of Structural Units for 4U6P
  • Structure Factors (555 Kb)
  • Retrieve 4U6P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U6P from S2C, [Save to disk]
  • Re-refined 4u6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U6P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U6P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u6p] [4u6p_T] [4u6p_P] [4u6p_C] [4u6p_D] [4u6p_A] [4u6p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4U6P
  • Community annotation for 4U6P at PDBWiki (http://pdbwiki.org)

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