4U7I Protein Transport date Jul 30, 2014
title Structure Of The Complex Of Spartin Mit And Ist1 Mim
authors E.Z.Guo, Z.Xu
compound source
Molecule: Spartin
Chain: A
Fragment: Mit Domain (Unp Residues 8-101)
Synonym: Spastic Paraplegia 20 Protein,Trans-Activated By H Virus Core Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spg20, Kiaa0610, Tahccp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid

Molecule: Ist1 Homolog
Chain: B
Fragment: Unp Residues 341-364
Synonym: Hist1,Putative Mapk-Activating Protein Pm28
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ist1, Kiaa0174
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 43 21 2
R_factor 0.190 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.257 46.257 115.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
Primary referenceDistinct Mechanisms of Recognizing Endosomal Sorting Complex Required for Transport (ESCRT)-III Protein IST1 by Different Microtubule Interacting and Trafficking (MIT) Domains., Guo EZ, Xu Z, J Biol Chem. 2015 Feb 5. pii: jbc.M114.607903. PMID:25657007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4u7i.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 4U7I
  • Structure Factors (122 Kb)
  • Retrieve 4U7I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U7I from S2C, [Save to disk]
  • Re-refined 4u7i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U7I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U7I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4U7I, from MSDmotif at EBI
  • Fold representative 4u7i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u7i_A] [4u7i] [4u7i_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4U7I: [MIT ] by SMART
  • Other resources with information on 4U7I
  • Community annotation for 4U7I at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science