4U7Y Protein Transport date Jul 31, 2014
title Structure Of The Complex Of Vps4b Mit And Ist1 Mim
authors E.Z.Guo, Z.Xu
compound source
Molecule: Vacuolar Protein Sorting-Associated Protein 4b
Chain: A
Fragment: Mit Domain (Unp Residues 1-89)
Synonym: Cell Migration-Inducing Gene 1 Protein,Suppressor Transport Growth Defect 1,Protein Skd1;
Ec: 3.6.4.6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps4b, Skd1, Vps42, Mig1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid

Molecule: Ist1 Homolog
Chain: B
Fragment: Unp Residues 341-364
Synonym: Hist1,Putative Mapk-Activating Protein Pm28
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ist1, Kiaa0174
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 6 2 2
R_factor 0.225 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.401 78.401 67.642 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Hydrolase E.C.3.6.4.6 BRENDA
Primary referenceDistinct Mechanisms of Recognizing Endosomal Sorting Complex Required for Transport (ESCRT)-III Protein IST1 by Different Microtubule Interacting and Trafficking (MIT) Domains., Guo EZ, Xu Z, J Biol Chem. 2015 Feb 5. pii: jbc.M114.607903. PMID:25657007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (4u7y.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 4U7Y
  • Structure Factors (47 Kb)
  • Retrieve 4U7Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U7Y from S2C, [Save to disk]
  • Re-refined 4u7y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U7Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U7Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4U7Y, from MSDmotif at EBI
  • Fold representative 4u7y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u7y_A] [4u7y_B] [4u7y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4U7Y: [MIT ] by SMART
  • Other resources with information on 4U7Y
  • Community annotation for 4U7Y at PDBWiki (http://pdbwiki.org)

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