4U7Y	Protein Transport	date	Jul 31, 2014
title	Structure Of The Complex Of Vps4b Mit And Ist1 Mim
authors	E.Z.Guo, Z.Xu
compound		source
Molecule: Vacuolar Protein Sorting-Associated Protein 4b Chain: A Fragment: Mit Domain (Unp Residues 1-89) Synonym: Cell Migration-Inducing Gene 1 Protein,Suppressor Transport Growth Defect 1,Protein Skd1; Ec: 3.6.4.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vps4b, Skd1, Vps42, Mig1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid
Molecule: Ist1 Homolog Chain: B Fragment: Unp Residues 341-364 Synonym: Hist1,Putative Mapk-Activating Protein Pm28 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ist1, Kiaa0174 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: P 6 2 2	R_factor 0.225 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.401 78.401 67.642 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand		enzyme	Hydrolase E.C.3.6.4.6 BRENDA
Primary reference	Distinct Mechanisms of Recognizing Endosomal Sorting Complex Required for Transport (ESCRT)-III Protein IST1 by Different Microtubule Interacting and Trafficking (MIT) Domains., Guo EZ, Xu Z, J Biol Chem. 2015 Feb 5. pii: jbc.M114.607903. PMID:25657007

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk] Biological Unit Coordinates (4u7y.pdb1.gz) 15 Kb CSU: Contacts of Structural Units for 4U7Y Structure Factors (47 Kb) Retrieve 4U7Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4U7Y from S2C, [Save to disk] Re-refined 4u7y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 4U7Y

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4U7Y, from MSDmotif at EBI Fold representative 4u7y from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4u7y_A] [4u7y_B] [4u7y] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4U7Y: [MIT ] by SMART

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