4U8D Calcium Binding Protein date Aug 02, 2014
title X-Ray Structure Of Mg-Bound Human Sorcin
authors A.Fiorillo, A.Ilari, G.Colotti
compound source
Molecule: Sorcin
Chain: A, B
Synonym: 22 Kda Protein,Cp-22,Cp22,V19
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sri
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
symmetry Space Group: P 43 21 2
R_factor 0.197 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.832 117.832 86.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4u8d.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 4U8D
  • CSU: Contacts of Structural Units for 4U8D
  • Structure Factors (1482 Kb)
  • Retrieve 4U8D in mmCIF format [Save to disk]
  • Re-refined 4u8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U8D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4u8d from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u8d_B] [4u8d_A] [4u8d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4U8D: [EFh ] by SMART
    • Other resources with information on 4U8D
  • Community annotation for 4U8D at PDBWiki (http://pdbwiki.org)

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